Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-e crispr-associated protein cse2/casb | AMED_RS29620 | Not Available | Negative | 6447400 - 6447996 | 22163.5 |
| type i-e crispr-associated protein cse1/casa | AMED_RS29625 | Not Available | Negative | 6447993 - 6449639 | 60540.5 |
| hypothetical protein | AMED_RS29630 | Not Available | Negative | 6449570 - 6449890 | 11666.6 |
| crispr-associated helicase cas3' | AMED_RS29635 | Not Available | Negative | 6449887 - 6452448 | 92480.6 |
| is3 family transposase | AMED_RS29640 | Not Available | Negative | 6452960 - 6453877 | 33551.6 |
| is3 family transposase | AMED_RS48315 | Not Available | Negative | 6453877 - 6454200 | 11988.4 |
| hypothetical protein | AMED_RS29650 | Not Available | Negative | 6454550 - 6456406 | 66944.8 |
| hypothetical protein | AMED_RS29655 | Not Available | Positive | 6456852 - 6457271 | 14388.9 |
| hypothetical protein | AMED_RS29660 | Not Available | Positive | 6457571 - 6457918 | 12931.3 |
| hypothetical protein | AMED_RS29665 | Not Available | Negative | 6458609 - 6458869 | 9029.06 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
