Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sacsin n-terminal atp-binding-like domain-containing protein | AMED_RS29575 | Not Available | Negative | 6430483 - 6435669 | 190288.0 |
| is110 family transposase | AMED_RS48310 | Not Available | Positive | 6437823 - 6438206 | 13542.1 |
| hypothetical protein | AMED_RS48990 | Not Available | Negative | 6438840 - 6439049 | 8414.12 |
| is701 family transposase | AMED_RS29585 | Not Available | Negative | 6439028 - 6440161 | 42503.5 |
| metal-dependent hydrolase | AMED_RS29590 | Not Available | Positive | 6440435 - 6441315 | 31478.9 |
| restriction endonuclease | AMED_RS29595 | Not Available | Positive | 6442266 - 6443297 | 37481.7 |
| hypothetical protein | AMED_RS29600 | Not Available | Positive | 6443939 - 6444193 | 9694.16 |
| type i-e crispr-associated protein cas6/cse3/case | AMED_RS29605 | Not Available | Negative | 6444925 - 6445575 | 24055.8 |
| type i-e crispr-associated protein cas5/casd | AMED_RS29610 | Not Available | Negative | 6445566 - 6446276 | 25675.5 |
| type i-e crispr-associated protein cas7/cse4/casc | AMED_RS29615 | Not Available | Negative | 6446273 - 6447403 | 40295.4 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
