Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin | AMED_RS29340 | Not Available | Positive | 6375989 - 6376624 | 22622.9 |
| abc transporter substrate-binding protein | AMED_RS29345 | Not Available | Negative | 6376631 - 6377887 | 44125.4 |
| alpha-l-rhamnosidase | AMED_RS29350 | Not Available | Negative | 6377884 - 6380511 | 96221.1 |
| carbohydrate abc transporter permease | AMED_RS29355 | Not Available | Negative | 6380508 - 6381329 | 29568.7 |
| carbohydrate abc transporter permease | AMED_RS29360 | Not Available | Negative | 6381326 - 6382270 | 33808.2 |
| laci family dna-binding transcriptional regulator | AMED_RS29365 | Not Available | Positive | 6382441 - 6383472 | 37003.3 |
| substrate-binding domain-containing protein | AMED_RS48955 | Not Available | Negative | 6383636 - 6384490 | 29839.8 |
| alpha-l-rhamnosidase c-terminal domain-containing protein | AMED_RS29375 | Not Available | Positive | 6384941 - 6387121 | 75278.2 |
| glycosyl hydrolase | AMED_RS29380 | Not Available | Positive | 6387239 - 6388978 | 62138.5 |
| metal-dependent hydrolase | AMED_RS48960 | Not Available | Negative | 6388914 - 6389996 | 37764.5 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
