Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase family protein | AMED_RS02830 | Not Available | Positive | 549680 - 550336 | 24735.2 |
| glycoside hydrolase family 75 protein | AMED_RS02835 | Not Available | Positive | 550657 - 551352 | 23874.8 |
| nucleotide sugar dehydrogenase | AMED_RS02840 | Not Available | Positive | 551559 - 552869 | 46333.7 |
| glycosyltransferase family 4 protein | AMED_RS02845 | Not Available | Positive | 552859 - 554040 | 43512.0 |
| exopolysaccharide biosynthesis protein | AMED_RS02850 | Not Available | Positive | 554150 - 555508 | 47302.6 |
| wzz/fepe/etk n-terminal domain-containing protein | AMED_RS02855 | Not Available | Positive | 555505 - 557460 | 68219.5 |
| asparagine synthase (glutamine-hydrolyzing) | AMED_RS02860 | Not Available | Positive | 557503 - 559413 | 69660.5 |
| bi-domain-containing oxidoreductase | AMED_RS02865 | Not Available | Positive | 559410 - 561587 | 77141.6 |
| alginate lyase family protein | AMED_RS02870 | Not Available | Positive | 561685 - 563817 | 75921.4 |
| right-handed parallel beta-helix repeat-containing protein | AMED_RS02875 | Not Available | Positive | 563827 - 565353 | 53937.2 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
