Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | AMED_RS28990 | Not Available | Negative | 6309481 - 6310971 | 53958.8 |
| iclr family transcriptional regulator | AMED_RS28995 | Not Available | Negative | 6311069 - 6311866 | 28554.3 |
| sdr family oxidoreductase | AMED_RS29000 | Not Available | Positive | 6311908 - 6312699 | 26297.3 |
| cupin domain-containing protein | AMED_RS29005 | Not Available | Positive | 6312714 - 6313214 | 18273.4 |
| alpha/beta fold hydrolase | AMED_RS29010 | Not Available | Positive | 6313211 - 6314107 | 33588.0 |
| 2,3-dihydroxyphenylpropionate 1,2-dioxygenase | AMED_RS29015 | Not Available | Positive | 6314107 - 6315036 | 32391.6 |
| metal-dependent hydrolase | AMED_RS29020 | Not Available | Negative | 6315052 - 6315156 | 3514.48 |
| transposase | AMED_RS49540 | Not Available | Positive | 6315479 - 6315841 | 13223.6 |
| cold shock domain-containing protein | AMED_RS49545 | Not Available | Negative | 6315796 - 6316515 | 24503.5 |
| metal-dependent hydrolase | AMED_RS49715 | Not Available | Negative | 6316546 - 6316743 | 7186.36 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
