Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | AMED_RS26365 | Not Available | Positive | 5769046 - 5769918 | 31781.6 |
| gh1 family beta-glucosidase | AMED_RS26370 | Not Available | Positive | 5769915 - 5771327 | 51429.1 |
| ilvd/edd family dehydratase | AMED_RS26375 | Not Available | Positive | 5771474 - 5773240 | 62754.9 |
| duf3040 domain-containing protein | AMED_RS26380 | Not Available | Positive | 5773305 - 5773607 | 10760.0 |
| cbs domain-containing protein | AMED_RS26385 | Not Available | Negative | 5773692 - 5774108 | 14675.5 |
| udgx family uracil-dna binding protein | AMED_RS26390 | Not Available | Positive | 5774200 - 5774832 | 22705.1 |
| non-homologous end-joining dna ligase | AMED_RS26395 | Not Available | Negative | 5774843 - 5775706 | 32011.6 |
| non-homologous end-joining dna ligase | AMED_RS26400 | Not Available | Negative | 5775703 - 5776647 | 35412.7 |
| ku protein | AMED_RS26405 | Not Available | Negative | 5776644 - 5777576 | 34941.8 |
| hypothetical protein | AMED_RS26410 | Not Available | Negative | 5777593 - 5777790 | 7151.55 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
