Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | AMED_RS22145 | Not Available | Positive | 4770773 - 4771621 | 29352.4 |
| sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein | AMED_RS22150 | Not Available | Positive | 4771611 - 4773410 | 63915.1 |
| sugar abc transporter substrate-binding protein | AMED_RS22155 | Not Available | Positive | 4773712 - 4775013 | 44808.8 |
| carbohydrate abc transporter permease | AMED_RS22160 | Not Available | Positive | 4775010 - 4775996 | 35685.2 |
| carbohydrate abc transporter permease | AMED_RS22165 | Not Available | Positive | 4775993 - 4776823 | 30054.7 |
| glycoside hydrolase family 3 protein | AMED_RS22170 | Not Available | Positive | 4776829 - 4778286 | 49432.0 |
| tetratricopeptide repeat protein | AMED_RS22175 | Not Available | Positive | 4778399 - 4781557 | 116452.0 |
| sh3 domain-containing protein | AMED_RS22180 | Not Available | Positive | 4781650 - 4782408 | 25966.9 |
| duf2235 domain-containing protein | AMED_RS22185 | Not Available | Negative | 4782466 - 4783524 | 39168.3 |
| gnat family n-acetyltransferase | AMED_RS22190 | Not Available | Negative | 4783589 - 4784122 | 19230.8 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
