Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylated-dna--[protein]-cysteine s-methyltransferase | AMED_RS21500 | Not Available | Negative | 4635973 - 4636566 | 21417.6 |
| rna polymerase sigma factor | AMED_RS21505 | Not Available | Negative | 4636563 - 4637039 | 17135.4 |
| putative protein n(5)-glutamine methyltransferase | AMED_RS21510 | Not Available | Negative | 4637075 - 4637839 | 26164.2 |
| l,d-transpeptidase | AMED_RS21515 | Not Available | Negative | 4637852 - 4638352 | 16909.1 |
| apc family permease | AMED_RS21520 | Not Available | Negative | 4638461 - 4639831 | 47069.4 |
| lrp/asnc family transcriptional regulator | AMED_RS21525 | Not Available | Positive | 4640015 - 4640497 | 17471.2 |
| aspartate aminotransferase family protein | AMED_RS21530 | Not Available | Positive | 4640614 - 4641981 | 49952.3 |
| metal-dependent hydrolase | AMED_RS21535 | Not Available | Positive | 4642219 - 4643428 | 43687.9 |
| hypothetical protein | AMED_RS21540 | Not Available | Positive | 4643460 - 4643849 | 14411.6 |
| response regulator transcription factor | AMED_RS21545 | Not Available | Positive | 4643854 - 4644507 | 23339.4 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
