Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | AMED_RS18690 | Not Available | Positive | 3986445 - 3987350 | 31709.1 |
| hypothetical protein | AMED_RS18695 | Not Available | Negative | 3987696 - 3988010 | 10832.9 |
| rhamnogalacturonan acetylesterase | AMED_RS18700 | Not Available | Negative | 3988001 - 3988777 | 27677.9 |
| glycosyl hydrolase 53 family protein | AMED_RS18705 | Not Available | Negative | 3989033 - 3990124 | 38432.8 |
| glycosyl hydrolase 115 family protein | AMED_RS18710 | Not Available | Positive | 3990333 - 3993287 | 107312.0 |
| polysaccharide deacetylase family protein | AMED_RS18715 | Not Available | Positive | 3993997 - 3994719 | 25295.8 |
| arabinan endo-1,5-alpha-l-arabinosidase | AMED_RS18720 | Not Available | Positive | 3994820 - 3995782 | 33682.4 |
| sgnh/gdsl hydrolase family protein | AMED_RS18725 | Not Available | Positive | 3995890 - 3996906 | 36137.4 |
| ricin-type beta-trefoil lectin domain protein | AMED_RS18730 | Not Available | Positive | 3996936 - 3998222 | 44219.3 |
| non-ribosomal peptide synthetase/type i polyketide synthase | AMED_RS18735 | Not Available | Negative | 3998328 - 4006370 | 282784.0 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
