Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrodipicolinate synthase family protein | AMED_RS16455 | Not Available | Positive | 3489501 - 3490412 | 32197.4 |
| proline racemase family protein | AMED_RS16460 | Not Available | Positive | 3490413 - 3491414 | 35770.8 |
| voc family protein | AMED_RS16465 | Not Available | Negative | 3491411 - 3491764 | 12970.2 |
| family 2b encapsulin nanocompartment shell protein | AMED_RS16470 | Not Available | Negative | 3491826 - 3493214 | 51069.8 |
| hypothetical protein | AMED_RS16475 | Not Available | Negative | 3493219 - 3493386 | 5466.6 |
| family 2b encapsulin nanocompartment shell protein | AMED_RS16480 | Not Available | Negative | 3493386 - 3494789 | 51099.2 |
| family 2 encapsulin nanocompartment cargo protein terpene cyclase | AMED_RS16485 | Not Available | Negative | 3494804 - 3495925 | 40279.6 |
| geranyl diphosphate 2-c-methyltransferase | AMED_RS16490 | Not Available | Negative | 3495936 - 3496787 | 31405.0 |
| carbohydrate abc transporter permease | AMED_RS16495 | Not Available | Negative | 3497081 - 3497911 | 30711.9 |
| carbohydrate abc transporter permease | AMED_RS16500 | Not Available | Negative | 3497908 - 3498813 | 33364.0 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
