Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ykva family protein | AMED_RS16355 | Not Available | Positive | 3472616 - 3473035 | 15083.1 |
| tigr03619 family f420-dependent llm class oxidoreductase | AMED_RS16360 | Not Available | Positive | 3473062 - 3473919 | 30337.3 |
| lysr family transcriptional regulator | AMED_RS16365 | Not Available | Negative | 3473912 - 3474847 | 33406.3 |
| succinate dehydrogenase cytochrome b subunit | AMED_RS16370 | Not Available | Positive | 3474929 - 3475633 | 26144.5 |
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | AMED_RS16375 | Not Available | Positive | 3475635 - 3477557 | 70663.2 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | AMED_RS16380 | Not Available | Positive | 3477554 - 3478300 | 26012.9 |
| helix-turn-helix transcriptional regulator | AMED_RS16385 | Not Available | Negative | 3478303 - 3479016 | 24864.0 |
| mfs transporter | AMED_RS16390 | Not Available | Positive | 3479128 - 3480324 | 40326.0 |
| lycopene cyclase domain-containing protein | AMED_RS16395 | Not Available | Negative | 3480550 - 3480870 | 11724.5 |
| lycopene cyclase domain-containing protein | AMED_RS16400 | Not Available | Negative | 3480867 - 3481193 | 11786.9 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
