Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | AMED_RS15560 | Not Available | Positive | 3261563 - 3262405 | 29470.8 |
| cytochrome c oxidase subunit i | AMED_RS15565 | Not Available | Negative | 3262514 - 3264286 | 65866.6 |
| glycogen debranching protein glgx | AMED_RS15570 | Not Available | Negative | 3264437 - 3266620 | 81591.1 |
| manganese catalase family protein | AMED_RS15575 | Not Available | Negative | 3266765 - 3267631 | 30981.9 |
| hypothetical protein | AMED_RS15580 | Not Available | Positive | 3267849 - 3268070 | 8435.77 |
| sdr family oxidoreductase | AMED_RS15585 | Not Available | Negative | 3268116 - 3268973 | 29762.1 |
| helix-turn-helix domain-containing protein | AMED_RS15590 | Not Available | Positive | 3269118 - 3269510 | 14032.8 |
| hypothetical protein | AMED_RS15595 | Not Available | Negative | 3269518 - 3270120 | 20553.2 |
| alpha-l-arabinofuranosidase b | AMED_RS15600 | Not Available | Positive | 3270429 - 3271985 | 53827.1 |
| arabinan endo-1,5-alpha-l-arabinosidase | AMED_RS48660 | Not Available | Positive | 3272350 - 3272523 | 5574.65 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
