Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | AMED_RS15115 | Not Available | Positive | 3176627 - 3177556 | 33236.8 |
| asnc family protein | AMED_RS15120 | Not Available | Negative | 3177553 - 3178554 | 34864.1 |
| duf885 family protein | AMED_RS15125 | Not Available | Positive | 3178689 - 3185318 | 242227.0 |
| fumarylacetoacetase | AMED_RS15130 | Not Available | Positive | 3185282 - 3186526 | 44134.9 |
| llm class f420-dependent oxidoreductase | AMED_RS15135 | Not Available | Positive | 3186558 - 3187598 | 37205.9 |
| class f sortase | AMED_RS15140 | Not Available | Negative | 3187980 - 3188555 | 18791.7 |
| ppx/gppa phosphatase family protein | AMED_RS15145 | Not Available | Positive | 3188812 - 3189753 | 33293.2 |
| hypothetical protein | AMED_RS15150 | Not Available | Positive | 3189795 - 3189977 | 6454.31 |
| glycoside hydrolase family 65 protein | AMED_RS15155 | Not Available | Negative | 3189958 - 3192357 | 88801.8 |
| had family phosphatase | AMED_RS15160 | Not Available | Negative | 3192354 - 3193085 | 25835.4 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
