Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | AMED_RS13925 | Not Available | Positive | 2918671 - 2919858 | 41868.0 |
| shikimate kinase | AMED_RS13930 | Not Available | Positive | 2919855 - 2920379 | 17917.4 |
| 3-dehydroquinate synthase | AMED_RS13935 | Not Available | Positive | 2920388 - 2921497 | 38502.5 |
| type ii 3-dehydroquinate dehydratase | AMED_RS13940 | Not Available | Positive | 2921494 - 2921925 | 15290.1 |
| gnat family n-acetyltransferase | AMED_RS13945 | Not Available | Positive | 2921922 - 2922848 | 33206.3 |
| beta-xylosidase | AMED_RS13950 | Not Available | Positive | 2923116 - 2924597 | 50746.6 |
| b-4dmt family transporter | AMED_RS13955 | Not Available | Negative | 2924839 - 2925324 | 16824.6 |
| xaa-pro peptidase family protein | AMED_RS13960 | Not Available | Positive | 2925393 - 2926481 | 37993.9 |
| elongation factor p | AMED_RS13965 | Not Available | Positive | 2926527 - 2927090 | 20434.2 |
| transcription antitermination factor nusb | AMED_RS13970 | Not Available | Positive | 2927090 - 2927545 | 16555.8 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
