Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine--trna ligase | AMED_RS13825 | Not Available | Positive | 2900157 - 2902817 | 95772.6 |
| holliday junction resolvase ruvx | AMED_RS13830 | Not Available | Positive | 2902882 - 2903310 | 15033.0 |
| endolytic transglycosylase mltg | AMED_RS13835 | Not Available | Positive | 2903307 - 2905586 | 82603.2 |
| shikimate dehydrogenase | AMED_RS13840 | Not Available | Positive | 2905576 - 2906430 | 29076.7 |
| grpb family protein | AMED_RS13845 | Not Available | Positive | 2906494 - 2907774 | 47091.4 |
| tetr/acrr family transcriptional regulator | AMED_RS13850 | Not Available | Negative | 2907725 - 2908384 | 24777.8 |
| hypothetical protein | AMED_RS13855 | Not Available | Negative | 2908410 - 2908826 | 14756.7 |
| alpha/beta hydrolase | AMED_RS13860 | Not Available | Negative | 2908926 - 2910191 | 43672.0 |
| helix-turn-helix domain-containing protein | AMED_RS13865 | Not Available | Positive | 2910252 - 2910797 | 19690.8 |
| d-2-hydroxyacid dehydrogenase family protein | AMED_RS13870 | Not Available | Positive | 2910824 - 2911759 | 33517.2 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
