Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | AMED_RS13675 | Not Available | Positive | 2866942 - 2867262 | 11439.6 |
| srpbcc family protein | AMED_RS13680 | Not Available | Positive | 2867259 - 2867726 | 17473.4 |
| ppk2 family polyphosphate kinase | AMED_RS13685 | Not Available | Positive | 2867744 - 2868595 | 31313.2 |
| s9 family peptidase | AMED_RS13690 | Not Available | Positive | 2868616 - 2870715 | 75505.8 |
| llm class f420-dependent oxidoreductase | AMED_RS13695 | Not Available | Positive | 2870712 - 2871662 | 34065.8 |
| fluoride efflux transporter crcb | AMED_RS13700 | Not Available | Negative | 2871667 - 2872041 | 13014.0 |
| duf190 domain-containing protein | AMED_RS13705 | Not Available | Negative | 2872038 - 2872370 | 12239.8 |
| crcb family protein | AMED_RS13710 | Not Available | Negative | 2872370 - 2872771 | 13542.0 |
| aminotransferase class v-fold plp-dependent enzyme | AMED_RS13715 | Not Available | Positive | 2872914 - 2874515 | 53531.6 |
| lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family protein | AMED_RS13720 | Not Available | Positive | 2874512 - 2875789 | 45628.2 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
