Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AMED_RS13080 | Not Available | Positive | 2731925 - 2732416 | 16654.0 |
| hypothetical protein | AMED_RS13085 | Not Available | Positive | 2732620 - 2733291 | 22405.3 |
| fumarate hydratase | AMED_RS13090 | Not Available | Negative | 2733340 - 2734998 | 59996.4 |
| sigma-70 family rna polymerase sigma factor | AMED_RS13095 | Not Available | Negative | 2735643 - 2736674 | 38338.7 |
| d-aminoacyl-trna deacylase | AMED_RS13100 | Not Available | Negative | 2737019 - 2737444 | 14737.8 |
| methyltransferase | AMED_RS13105 | Not Available | Negative | 2737441 - 2738943 | 53556.9 |
| amidohydrolase | AMED_RS13110 | Not Available | Positive | 2738972 - 2740270 | 45332.9 |
| duf3099 domain-containing protein | AMED_RS13115 | Not Available | Positive | 2740345 - 2740659 | 11574.2 |
| carbohydrate kinase family protein | AMED_RS13120 | Not Available | Negative | 2740677 - 2741549 | 28998.5 |
| pseudouridine-5'-phosphate glycosidase | AMED_RS13125 | Not Available | Negative | 2741546 - 2742451 | 30825.9 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
