Amycolatopsis mediterranei U32

Gram-positiveFilamentousNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis mediterranei U32 is a Gram-positive, filamentous bacterium characterized by its aerobic metabolism and mesophilic temperature range. This organism does not exhibit mobility, despite possessing flagella. It has a single replicon and a single membrane structure. Notably, Amycolatopsis mediterranei U32 is not considered pathogenic. The strain is cataloged under accession NC_014318.1, which provides a reference for its genomic information. The filamentous shape of this bacterium may play a role in its ecological interactions and nutrient acquisition in the environments it inhabits. Amycolatopsis species, including U32, are known for their potential in biotechnological applications, particularly in antibiotic production and biodegradation processes. The non-pathogenic nature of U32 further highlights its potential utility in various industrial and environmental contexts where safety is a concern. The filamentous morphology may enhance its ability to colonize surfaces and utilize resources in complex ecosystems. Thus, Amycolatopsis mediterranei U32 represents a significant organism for further research in both microbiology and applied sciences.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis mediterranei
StrainU32

Profile

Physiology
Gram staining propertiesPositive
ShapeFilamentous
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Amycolatopsis mediterranei U32, complete sequence.

Gene Summary

Adenine Count

1472594 bp

Thymine Count

1466081 bp

Guanine Count

3644933 bp

Cytosine Count

3653107 bp

Genome Length

10236715 bp

Protein-coding Genes

9582 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferritin-like domain-containing proteinAMED_RS12240Not AvailablePositive2558389 - 255913527332.2
fmn-dependent nadh-azoreductaseAMED_RS12245Not AvailablePositive2559150 - 255977922891.1
smr family transporterAMED_RS12250Not AvailablePositive2559779 - 25599887310.18
prolyl oligopeptidase family proteinAMED_RS12255Not AvailableNegative2559978 - 256199974873.4
neutral zinc metallopeptidaseAMED_RS12260Not AvailablePositive2562104 - 256308134000.8
tigr03086 family metal-binding proteinAMED_RS12265Not AvailableNegative2563074 - 256364620724.2
plp-dependent aminotransferase family proteinAMED_RS12270Not AvailablePositive2563730 - 256514250784.1
hypothetical proteinAMED_RS12275Not AvailablePositive2565139 - 256558516094.8
cbs domain-containing proteinAMED_RS12280Not AvailablePositive2565688 - 256611915191.4
duf4139 domain-containing proteinAMED_RS12285Not AvailableNegative2566159 - 256770955038.9

Displaying genes 2471 – 2480 of 9654 in total

Metabolites

169 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 169 metabolites

Health Effects

No health effects information available for this bacterium.