Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | AMED_RS12140 | Not Available | Positive | 2532986 - 2534095 | 38504.7 |
| tetr/acrr family transcriptional regulator | AMED_RS12145 | Not Available | Negative | 2534096 - 2534779 | 24541.3 |
| nad(p)/fad-dependent oxidoreductase | AMED_RS12150 | Not Available | Positive | 2534847 - 2535956 | 39985.5 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | AMED_RS12155 | Not Available | Positive | 2536408 - 2537901 | 53937.1 |
| membrane protein | AMED_RS12160 | Not Available | Positive | 2537898 - 2538371 | 16464.0 |
| hypothetical protein | AMED_RS12165 | Not Available | Negative | 2538391 - 2538837 | 15339.4 |
| duf349 domain-containing protein | AMED_RS12170 | Not Available | Negative | 2539380 - 2540693 | 48663.5 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | AMED_RS12175 | Not Available | Positive | 2540912 - 2541823 | 32634.8 |
| diaminopimelate epimerase | AMED_RS12180 | Not Available | Positive | 2541834 - 2542661 | 28694.9 |
| valine--trna ligase | AMED_RS12185 | Not Available | Negative | 2542678 - 2545191 | 93062.3 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
