Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AMED_RS11995 | Not Available | Negative | 2505704 - 2505961 | 9776.82 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | AMED_RS12000 | Not Available | Negative | 2506176 - 2506781 | 20093.3 |
| phosphogluconate dehydratase | AMED_RS12005 | Not Available | Negative | 2506778 - 2508667 | 65788.9 |
| hypothetical protein | AMED_RS12010 | Not Available | Positive | 2508921 - 2509208 | 10332.1 |
| hypothetical protein | AMED_RS12015 | Not Available | Positive | 2509205 - 2510029 | 31065.9 |
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | AMED_RS12020 | Not Available | Positive | 2510094 - 2512010 | 69805.7 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | AMED_RS12025 | Not Available | Positive | 2512084 - 2512836 | 28646.2 |
| gnat family n-acetyltransferase | AMED_RS12030 | Not Available | Positive | 2512918 - 2513442 | 19050.7 |
| duf397 domain-containing protein | AMED_RS12035 | Not Available | Negative | 2513506 - 2513691 | 6658.76 |
| helix-turn-helix transcriptional regulator | AMED_RS12040 | Not Available | Negative | 2513695 - 2514546 | 32786.8 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
