Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vii secretion protein eccc | AMED_RS11460 | Not Available | Negative | 2391721 - 2395647 | 140097.0 |
| wxg100 family type vii secretion target | AMED_RS11465 | Not Available | Positive | 2395790 - 2396560 | 26242.7 |
| wxg100 family type vii secretion target | AMED_RS11470 | Not Available | Positive | 2396586 - 2397665 | 36237.5 |
| wxg100 family type vii secretion target | AMED_RS11475 | Not Available | Positive | 2397669 - 2399030 | 46731.4 |
| hypothetical protein | AMED_RS11480 | Not Available | Positive | 2399027 - 2399500 | 16680.9 |
| ybab/ebfc family nucleoid-associated protein | AMED_RS11485 | Not Available | Positive | 2399497 - 2399817 | 11783.0 |
| type vii secretion integral membrane protein eccd | AMED_RS11490 | Not Available | Positive | 2399817 - 2401187 | 45767.7 |
| glycoside hydrolase family 30 beta sandwich domain-containing protein | AMED_RS11495 | Not Available | Positive | 2401276 - 2402544 | 46107.3 |
| type vii secretion protein ecce | AMED_RS11500 | Not Available | Negative | 2402618 - 2403658 | 36647.4 |
| type vii secretion protein eccb | AMED_RS11505 | Not Available | Positive | 2403800 - 2405221 | 47582.0 |
Pathways
1219 pathways
Health Effects
No health effects information available for this bacterium.
