Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit beta | AMED_RS00010 | Not Available | Positive | 2524 - 3657 | 39396.0 |
| phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating) | AMED_RS00015 | Not Available | Positive | 3691 - 4581 | 31770.9 |
| dna replication/repair protein recf | AMED_RS00020 | Not Available | Positive | 4592 - 5746 | 41744.0 |
| dcia family protein | AMED_RS00025 | Not Available | Positive | 5967 - 6470 | 18035.6 |
| dna topoisomerase (atp-hydrolyzing) subunit b | AMED_RS00030 | Not Available | Positive | 6668 - 8635 | 72516.9 |
| dna gyrase subunit a | AMED_RS00035 | Not Available | Positive | 8688 - 11225 | 93512.0 |
| duf3566 domain-containing protein | AMED_RS00040 | Not Available | Positive | 11278 - 11943 | 22705.1 |
| Trna-ile | Not Available | Not Available | Positive | 11993 - 12066 | Not Available |
| sigma-70 family rna polymerase sigma factor | AMED_RS49655 | Not Available | Negative | 12271 - 13707 | 52276.0 |
| hypothetical protein | AMED_RS00055 | Not Available | Negative | 13817 - 14047 | 8250.84 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
