Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| family 2b encapsulin nanocompartment shell protein | AMED_RS07775 | Not Available | Negative | 1623855 - 1625261 | 51240.4 |
| duf4239 domain-containing protein | AMED_RS07780 | Not Available | Positive | 1625750 - 1626517 | 26828.0 |
| duf6923 family protein | AMED_RS07785 | Not Available | Positive | 1626514 - 1627821 | 44300.3 |
| autoinducer 2 abc transporter substrate-binding protein | AMED_RS07790 | Not Available | Negative | 1627828 - 1628844 | 34924.1 |
| duf4396 domain-containing protein | AMED_RS07795 | Not Available | Positive | 1629105 - 1629560 | 15516.3 |
| glycoside hydrolase family 88 protein | AMED_RS07800 | Not Available | Negative | 1629598 - 1630845 | 44899.9 |
| hypothetical protein | AMED_RS07805 | Not Available | Negative | 1631063 - 1632286 | 42334.9 |
| btad domain-containing putative transcriptional regulator | AMED_RS07810 | Not Available | Negative | 1632806 - 1635742 | 105278.0 |
| hypothetical protein | AMED_RS07815 | Not Available | Positive | 1635854 - 1636510 | 22128.7 |
| alkaline phosphatase | AMED_RS07820 | Not Available | Positive | 1636542 - 1638113 | 56934.1 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
