Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | AMED_RS07725 | Not Available | Positive | 1612710 - 1613021 | 11349.6 |
| dna polymerase iv | AMED_RS07730 | Not Available | Positive | 1613023 - 1614330 | 46047.3 |
| glycoside hydrolase family 88 protein | AMED_RS07735 | Not Available | Negative | 1614358 - 1615437 | 39119.1 |
| fadr/gntr family transcriptional regulator | AMED_RS07740 | Not Available | Negative | 1615507 - 1616175 | 23851.7 |
| abc transporter permease | AMED_RS07745 | Not Available | Negative | 1616178 - 1617203 | 34744.5 |
| sugar abc transporter atp-binding protein | AMED_RS07750 | Not Available | Negative | 1617200 - 1618738 | 55168.8 |
| substrate-binding domain-containing protein | AMED_RS07755 | Not Available | Negative | 1618802 - 1619776 | 33172.1 |
| capa family protein | AMED_RS07760 | Not Available | Positive | 1620143 - 1621285 | 39499.5 |
| family 2 encapsulin nanocompartment cargo protein polyprenyl transferase | AMED_RS07765 | Not Available | Negative | 1621448 - 1622467 | 35019.6 |
| family 2b encapsulin nanocompartment shell protein | AMED_RS07770 | Not Available | Negative | 1622467 - 1623858 | 51232.0 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
