Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | U32 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Gene Summary
Adenine Count
1472594 bp
Thymine Count
1466081 bp
Guanine Count
3644933 bp
Cytosine Count
3653107 bp
Genome Length
10236715 bp
Protein-coding Genes
9582 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc ribbon domain-containing protein | AMED_RS05975 | Not Available | Positive | 1233301 - 1234038 | 27697.8 |
| bifunctional rnase h/acid phosphatase | AMED_RS05980 | Not Available | Positive | 1234116 - 1235324 | 42672.8 |
| hypothetical protein | AMED_RS05985 | Not Available | Positive | 1235524 - 1237266 | 61594.4 |
| slc13 family permease | AMED_RS05990 | Not Available | Negative | 1237250 - 1238491 | 42762.6 |
| luxr family transcriptional regulator | AMED_RS05995 | Not Available | Negative | 1238784 - 1241609 | 100606.0 |
| hypothetical protein | AMED_RS06000 | Not Available | Negative | 1241641 - 1242048 | 13562.5 |
| sigma-70 family rna polymerase sigma factor | AMED_RS06005 | Not Available | Negative | 1242045 - 1242623 | 21550.7 |
| duf4142 domain-containing protein | AMED_RS06010 | Not Available | Positive | 1242872 - 1243540 | 23350.9 |
| ferredoxin | AMED_RS06015 | Not Available | Positive | 1243549 - 1244361 | 28261.6 |
| nad(p)/fad-dependent oxidoreductase | AMED_RS06020 | Not Available | Positive | 1244358 - 1245593 | 43900.9 |
Pathways
1351 pathways
Health Effects
No health effects information available for this bacterium.
