Syntrophothermus lipocalidus DSM 12680

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Syntrophomonadaceae

Genus

Syntrophothermus

Description

Syntrophothermus lipocalidus DSM 12680 is a Gram-negative, anaerobic bacterium characterized by its bacilli shape and thermophilic nature, thriving optimally at a temperature of 55°C. This organism is specialized in its habitat, which suggests a specific ecological niche where it can effectively metabolize substrates under anaerobic conditions. Notably, S. lipocalidus is non-motile and possesses flagella, indicating it may have adapted its flagellar structure for functions other than locomotion. The bacterium has a single replicon and a single membrane, which is typical for many Gram-negative bacteria. Importantly, S. lipocalidus is not pathogenic, which highlights its potential role in ecological systems without contributing to disease. The specialized nature of S. lipocalidus may indicate its involvement in specific biochemical processes within its habitat, possibly contributing to the breakdown of complex organic materials in thermophilic environments. This bacterium, with its unique metabolic capabilities, may play a significant role in biogeochemical cycles, particularly in anaerobic digestion processes that are essential for nutrient recycling and energy production in ecosystems where other organisms cannot thrive. Its genomic reference, NC_014220.1, provides a basis for further study into its metabolic pathways and ecological functions, offering insights into the diversity of life in extreme environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilySyntrophomonadaceae
GenusSyntrophothermus
SpeciesSyntrophothermus lipocalidus
StrainDSM 12680

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Syntrophothermus lipocalidus DSM 12680
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature55
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophothermus lipocalidus DSM 12680, complete sequence.

Gene Summary

Adenine Count

587412 bp

Thymine Count

591567 bp

Guanine Count

612971 bp

Cytosine Count

613609 bp

Genome Length

2405559 bp

Protein-coding Genes

2339 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4fe-4s dicluster domain-containing proteinSLIP_RS10255Not AvailableNegative2104287 - 210519234100.1
hydrogenase iron-sulfur subunitSLIP_RS10260Not AvailableNegative2105189 - 210562315884.9
cob--com heterodisulfide reductase iron-sulfur subunit a family proteinSLIP_RS10265Not AvailableNegative2105614 - 210759671545.6
cob--com heterodisulfide reductase iron-sulfur subunit b family proteinSLIP_RS10275Not AvailableNegative2107593 - 210881944759.9
4fe-4s dicluster domain-containing proteinSLIP_RS10280Not AvailableNegative2108816 - 210938521212.1
nadph-dependent glutamate synthaseSLIP_RS10285Not AvailableNegative2110003 - 211140650938.6
sulfide/dihydroorotate dehydrogenase-like fad/nad-binding proteinSLIP_RS10290Not AvailableNegative2111394 - 211223330624.3
nad(+)/nadh kinaseSLIP_RS10295Not AvailableNegative2112460 - 211330830400.1
duf362 domain-containing proteinSLIP_RS12465Not AvailableNegative2113766 - 21139426081.18
sigma-54-dependent fis family transcriptional regulatorSLIP_RS10300Not AvailableNegative2114839 - 211679772401.8

Displaying genes 2071 – 2080 of 2395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014062Valeric acidC5H10O2Chemical structure of Valeric acid109-52-4
Average102.1317Da
Monoisotopic102.068079564Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.