Syntrophothermus lipocalidus DSM 12680

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Syntrophomonadaceae

Genus

Syntrophothermus

Description

Syntrophothermus lipocalidus DSM 12680 is a Gram-negative, anaerobic bacterium characterized by its bacilli shape and thermophilic nature, thriving optimally at a temperature of 55°C. This organism is specialized in its habitat, which suggests a specific ecological niche where it can effectively metabolize substrates under anaerobic conditions. Notably, S. lipocalidus is non-motile and possesses flagella, indicating it may have adapted its flagellar structure for functions other than locomotion. The bacterium has a single replicon and a single membrane, which is typical for many Gram-negative bacteria. Importantly, S. lipocalidus is not pathogenic, which highlights its potential role in ecological systems without contributing to disease. The specialized nature of S. lipocalidus may indicate its involvement in specific biochemical processes within its habitat, possibly contributing to the breakdown of complex organic materials in thermophilic environments. This bacterium, with its unique metabolic capabilities, may play a significant role in biogeochemical cycles, particularly in anaerobic digestion processes that are essential for nutrient recycling and energy production in ecosystems where other organisms cannot thrive. Its genomic reference, NC_014220.1, provides a basis for further study into its metabolic pathways and ecological functions, offering insights into the diversity of life in extreme environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilySyntrophomonadaceae
GenusSyntrophothermus
SpeciesSyntrophothermus lipocalidus
StrainDSM 12680

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Syntrophothermus lipocalidus DSM 12680
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature55
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophothermus lipocalidus DSM 12680, complete sequence.

Gene Summary

Adenine Count

587412 bp

Thymine Count

591567 bp

Guanine Count

612971 bp

Cytosine Count

613609 bp

Genome Length

2405559 bp

Protein-coding Genes

2339 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSLIP_RS09380Not AvailableNegative1946809 - 19470489903.84
hi0074 family nucleotidyltransferase substrate-binding subunitSLIP_RS09385Not AvailablePositive1947428 - 194782915443.5
nucleotidyltransferase family proteinSLIP_RS09390Not AvailablePositive1947826 - 194811910752.0
nucleotidyl transferase abieii/abigii toxin family proteinSLIP_RS09395Not AvailablePositive1948289 - 194885822195.7
hypothetical proteinSLIP_RS09400Not AvailablePositive1948839 - 194913210927.4
flagellin lysine-n-methylaseSLIP_RS09405Not AvailableNegative1949180 - 195043347709.0
hypothetical proteinSLIP_RS09410Not AvailableNegative1950556 - 195092413849.4
sec-c metal-binding domain-containing proteinSLIP_RS12950Not AvailableNegative1950960 - 19512359859.94
hypothetical proteinSLIP_RS12955Not AvailableNegative1951235 - 19513574553.57
duf488 domain-containing proteinSLIP_RS09420Not AvailablePositive1951860 - 195229716972.3

Displaying genes 1891 – 1900 of 2395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014062Valeric acidC5H10O2Chemical structure of Valeric acid109-52-4
Average102.1317Da
Monoisotopic102.068079564Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.