Shewanella violacea DSS12

Gram-negativeBacilliNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella violacea DSS12 is a psychrophilic, Gram-negative bacterium characterized by its bacilli shape and unique cellular arrangement, typically found in pairs or as singles. This organism is a heterotroph, relying on organic compounds as its energy source. It exhibits facultative anaerobic behavior, allowing it to thrive in varying oxygen conditions. Notably, S. violacea DSS12 possesses flagella, which contributes to its motility, although it is not mobile. This bacterium has a distinctive cellular structure with two membranes and a single replicon, which is important for its genetic stability and cellular functions. S. violacea DSS12 is nonsporulating, indicating that it does not form spores for survival in adverse conditions. It exists as a free-living organism, highlighting its adaptability to specialized habitats. An ecological insight into Shewanella violacea DSS12 is its role in its native environment, where it is likely involved in nutrient cycling and organic matter decomposition. Given its psychrophilic nature, S. violacea DSS12 may play a significant role in cold marine ecosystems, contributing to the breakdown of organic materials in low-temperature environments. This functional role emphasizes the importance of such microorganisms in maintaining ecological balance in specialized habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella violacea
StrainDSS12

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shewanella violacea DSS12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangePsychrophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella violacea DSS12, complete sequence.

Gene Summary

Adenine Count

1371241 bp

Thymine Count

1371987 bp

Guanine Count

1108518 bp

Cytosine Count

1110352 bp

Genome Length

4962103 bp

Protein-coding Genes

3986 genes

Non-Coding Genes

187 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uridine diphosphate-n-acetylglucosamine-binding protein yvckSVI_RS10140Not AvailableNegative2493686 - 249460933209.1
glucosaminidase domain-containing proteinSVI_RS10145Not AvailablePositive2494748 - 249556030885.2
duf2987 domain-containing proteinSVI_RS10150Not AvailablePositive2495553 - 249617923474.2
trna 2-thiocytidine(32) synthetase ttcaSVI_RS10155Not AvailableNegative2496295 - 249724535421.6
universal stress protein uspeSVI_RS10160Not AvailableNegative2497351 - 249828334316.0
electron transport transcriptional regulator etraSVI_RS10165Not AvailableNegative2498446 - 249919527795.5
sulfite exporter taue/safe family proteinSVI_RS10170Not AvailableNegative2499251 - 249994324678.2
cbb3-type cytochrome oxidase assembly protein ccosSVI_RS10175Not AvailableNegative2499940 - 25001497819.28
heavy metal translocating p-type atpaseSVI_RS10180Not AvailableNegative2500146 - 250253386301.4
fixh family proteinSVI_RS10185Not AvailableNegative2502687 - 250316618656.4

Displaying genes 2071 – 2080 of 4173 in total

Metabolites

1740 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 1740 metabolites

Health Effects

No health effects information available for this bacterium.