Nitrosococcus halophilus Nc 4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Nitrosococcus

Description

Nitrosococcus halophilus Nc 4 is a Gram-negative, halophilic bacterium known for its role in the nitrogen cycle, particularly in marine and hypersaline environments. This microbe is capable of oxidizing ammonium to nitrite, a critical process in nitrification, which contributes to nitrogen availability in saline ecosystems. As a member of the Nitrosococcus genus, it exhibits specific adaptations that allow it to thrive in high-salinity conditions, differentiating it from non-halophilic nitrifying bacteria. The halophilic nature of Nitrosococcus halophilus Nc 4 suggests that it possesses unique osmoregulatory mechanisms and cellular structures that facilitate survival in extreme salt concentrations. Its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may also contribute to its resilience in such environments, providing a barrier against osmotic stress and potentially harmful compounds. Understanding the biochemical pathways and environmental requirements of Nitrosococcus halophilus Nc 4 can offer insights into the functioning of microbial communities in hypersaline habitats. This species not only plays a significant role in nitrogen cycling but may also influence the broader ecological dynamics within these unique ecosystems, including nutrient availability and interactions with other halophilic microorganisms. Such insights could enhance our understanding of biogeochemical processes in extreme environments and inform the conservation of microbial biodiversity in saline ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusNitrosococcus
SpeciesNitrosococcus halophilus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrosococcus halophilus Nc 4

Accession NumberNC_013958.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

66 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dead/deah box helicase family proteinNHAL_RS19225Not Available-154 - 3549129471.0
restriction endonuclease subunit sNHAL_RS19995Not Available-3565 - 481545960.9
class i sam-dependent dna methyltransferaseNHAL_RS19235Not Available-4812 - 627255298.4
type ii toxin-antitoxin system rele/pare family toxinNHAL_RS19240Not Available+6630 - 695612145.4
dna-binding proteinNHAL_RS19245Not Available+6960 - 727711819.4
metal-dependent hydrolaseNHAL_RS19250Not Available-7450 - 855641195.6
duf4926 domain-containing proteinNHAL_RS19255Not Available-8612 - 88367861.48
duf6883 domain-containing proteinNHAL_RS19260Not Available-8836 - 918012934.7
atp-binding proteinNHAL_RS19265Not Available-9182 - 1017436224.5
hypothetical proteinNHAL_RS19275Not Available-10816 - 110528956.76

Displaying genes 1 – 10 of 3968 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

67 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da

Displaying 1–10 of 67 metabolites