Pirellula staleyi DSM 6068

Gram-negativeCocciNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Pirellulales

Family

Pirellulaceae

Genus

Pirellula

Description

Pirellula staleyi DSM 6068 is a Gram-negative, aerobic bacterium characterized by its cocci shape and free-living lifestyle in aquatic habitats. This organism exists as single cells and does not exhibit mobility, despite the presence of flagella, which may play a role in its ecological interactions or surface attachment. P. staleyi is mesophilic, thriving within a moderate temperature range, which is typical for many aquatic microorganisms. Its cellular structure is notable for having two membranes and a single replicon, reflecting its evolutionary adaptations. Importantly, this species is nonsporulating and has been classified as non-pathogenic, which indicates that it does not cause disease in other organisms. The free-living nature of P. staleyi suggests it plays a role in the aquatic ecosystem, potentially contributing to nutrient cycling or influencing microbial community dynamics. As a Gram-negative bacterium, it may also possess unique biochemical pathways that allow it to utilize various substrates found in its environment. This adaptability may provide insights into the ecological functions of similar microorganisms in aquatic systems, emphasizing their importance in maintaining ecological balance and supporting diverse biological communities. Given its distinct traits and ecological role, Pirellula staleyi DSM 6068 serves as a valuable model for studying the complexities of microbial life in aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPirellulales
FamilyPirellulaceae
GenusPirellula
SpeciesPirellula staleyi
StrainDSM 6068

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pirellula staleyi DSM 6068
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pirellula staleyi DSM 6068, complete sequence.

Gene Summary

Adenine Count

1319360 bp

Thymine Count

1316212 bp

Guanine Count

1779497 bp

Cytosine Count

1781130 bp

Genome Length

6196199 bp

Protein-coding Genes

4543 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tigr00730 family rossman fold proteinPSTA_RS25160Not AvailablePositive1295889 - 129804879907.7
sdr family nad(p)-dependent oxidoreductasePSTA_RS05205Not AvailablePositive1298128 - 129890727744.5
yhch/yjgk/yial family proteinPSTA_RS05210Not AvailablePositive1299125 - 129959817850.4
efflux rnd transporter periplasmic adaptor subunitPSTA_RS05215Not AvailablePositive1299858 - 130146257807.2
efflux rnd transporter permease subunitPSTA_RS05220Not AvailablePositive1301459 - 1304848122917.0
had family hydrolasePSTA_RS05225Not AvailablePositive1304856 - 130552124367.2
rep-associated tyrosine transposasePSTA_RS05230Not AvailablePositive1305668 - 130623722275.0
prephenate dehydrogenasePSTA_RS05235Not AvailablePositive1306516 - 130737029840.7
phosphoribosylformylglycinamidine synthase subunit purlPSTA_RS05240Not AvailablePositive1307306 - 1310296107466.0
phosphoribosylformylglycinamidine synthase iPSTA_RS05245Not AvailablePositive1310603 - 131136727808.3

Displaying genes 1001 – 1010 of 4595 in total

Metabolites

1620 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 1620 metabolites

Health Effects

No health effects information available for this bacterium.