Rothia mucilaginosa DY-18

Gram-positiveCocciMotileMicroaerophile

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Rothia

Description

Rothia mucilaginosa (strain ATCC DY-18) is a cocci-shaped Gram-positive bacterium that inhabits the oral cavity and upper respiratory tract. The bacterium is considered as an opportunistic pathogen and has been associated with endocarditis, meningitis, and peritonitis. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusRothia
SpeciesRothia mucilaginosa
StrainDY-18

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Rothia mucilaginosa DY-18
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Rothia mucilaginosa DY-18

NC_013715.1

Gene Summary

Adenine Count

456667 bp

Thymine Count

457728 bp

Guanine Count

673672 bp

Cytosine Count

676536 bp

Genome Length

2264603 bp

Protein-coding Genes

1709 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaRMDY18_RS00005Not Available+1 - 169562267.6
dna polymerase iii subunit betaRMDY18_RS00010Not Available+2497 - 362140171.9
dna replication/repair protein recfRMDY18_RS00015Not Available+3738 - 497945311.8
duf721 domain-containing proteinRMDY18_RS00020Not Available+4972 - 566725625.4
dna topoisomerase (atp-hydrolyzing) subunit bRMDY18_RS00025Not Available+6082 - 811875280.5
dna gyrase subunit aRMDY18_RS00030Not Available+8198 - 1082896864.0
duf3566 domain-containing proteinRMDY18_RS00035Not Available+10828 - 1142420368.0
Trna-ileNot AvailableNot Available+11624 - 11697Not Available
Trna-alaNot AvailableNot Available+11842 - 11914Not Available
5s ribosomal rnaNot AvailableNot Available+11918 - 12034Not Available

Displaying genes 1 – 10 of 1770 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

425 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 425 metabolites