Paenibacillus sp. Y412MC10

BacilliAerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. strain JDR-2 is an aggressively xylanolytic bacterium isolated from decaying sweet gum wood. It is a free-living, aerobic, mesophilic, rod-shaped, sporulating bacterium found in association with rotting wood. Its extracellular xylanase efficiently degrades methylglucuronoxylan (MeGAXn), the major hemicellulose found in hardwood and crop residues, making it a potentially useful organism for the conversion of lignocellulosic biomass to alternative fuels and bio-based products (adapted from PubMed 16461704). (HAMAP: PAESJ)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. Y412MC10
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Paenibacillus sp. Y412MC10

NC_013406.1

Gene Summary

Adenine Count

1731832 bp

Thymine Count

1740731 bp

Guanine Count

1819155 bp

Cytosine Count

1829947 bp

Genome Length

7121665 bp

Protein-coding Genes

6237 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+788311 - 788322Not Available
IntegraseGYMC10_RS03370Not Available+788463 - 78908623942.8
hypothetical proteinGYMC10_RS32420Not Available+789577 - 7897145020.22
atp-binding proteinGYMC10_RS03375Not Available+789755 - 79100247185.3
Hypothetical proteinGYMC10_RS03380Not Available-791049 - 79191533060.1
Impb/mucb/samb family proteinGYMC10_RS03385Not Available+792070 - 79334147533.0
yold-like family proteinGYMC10_RS03390Not Available+793338 - 79366712962.5
duf4367 domain-containing proteinGYMC10_RS03395Not Available-793734 - 79438123066.9
Putative n-acetylmuramoyl-l-alanine amidaseGYMC10_RS31730Not Available-794395 - 79487417044.8
Dna modification methylaseGYMC10_RS32850Not Available+795613 - 79602915089.7

Displaying genes 1 – 10 of 6387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites