Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | PC1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1168310 bp
Thymine Count
1169207 bp
Guanine Count
1258460 bp
Cytosine Count
1266936 bp
Genome Length
4862913 bp
Protein-coding Genes
4113 genes
Non-Coding Genes
256 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tip protein vgrg | PC1_RS16125 | Not Available | Negative | 3647323 - 3649359 | 75062.2 |
| hcp family type vi secretion system effector | PC1_RS16130 | Not Available | Negative | 3649589 - 3650107 | 19095.6 |
| tetratricopeptide repeat protein | PC1_RS16135 | Not Available | Negative | 3650646 - 3652001 | 50061.8 |
| vasl domain-containing protein | PC1_RS16140 | Not Available | Negative | 3652030 - 3653466 | 54958.2 |
| type vi secretion system membrane subunit tssm | PC1_RS16145 | Not Available | Negative | 3653515 - 3657012 | 132655.0 |
| type vi secretion system protein tssa | PC1_RS16150 | Not Available | Negative | 3657037 - 3658461 | 52565.8 |
| type vi secretion system-associated protein vasi | PC1_RS16155 | Not Available | Negative | 3658473 - 3659033 | 20278.2 |
| sigma-54 interaction domain-containing protein | PC1_RS16160 | Not Available | Negative | 3659033 - 3660571 | 57786.4 |
| type vi secretion system atpase tssh | PC1_RS16165 | Not Available | Negative | 3660574 - 3663171 | 95436.1 |
| type ivb secretion system protein icmh/dotu | PC1_RS16170 | Not Available | Negative | 3663185 - 3663961 | 29983.2 |
Pathways
1404 pathways
Health Effects
No health effects information available for this bacterium.
