Pectobacterium carotovorum subsp. carotovorum PC1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum subsp. carotovorum PC1 is a Gram-negative bacterium that exhibits a bacilli shape and possesses flagella, allowing for mobility. This organism is classified as facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments. P. carotovorum PC1 is mesophilic, meaning it grows optimally at moderate temperatures, which typically range from 20°C to 45°C. This bacterium is characterized by having a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. It is nonsporulating, which means it does not form spores as a means of survival, instead relying on its free-living biotic relationship for survival and reproduction. P. carotovorum subsp. carotovorum is primarily associated with host organisms, indicating its role as a plant pathogen. Its ability to move and adapt to varying oxygen levels may contribute to its pathogenicity, facilitating infection in host plants. Understanding the traits of P. carotovorum PC1 can provide insights into its ecological role, particularly in the context of plant health and disease dynamics. As a free-living organism that interacts with host plants, it may influence agricultural practices and the management of plant diseases in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
StrainPC1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pectobacterium carotovorum subsp. carotovorum PC1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum subsp. carotovorum PC1, complete

Gene Summary

Adenine Count

1168310 bp

Thymine Count

1169207 bp

Guanine Count

1258460 bp

Cytosine Count

1266936 bp

Genome Length

4862913 bp

Protein-coding Genes

4113 genes

Non-Coding Genes

256 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-hydroxyacid dehydrogenasePC1_RS13495Not AvailablePositive3080490 - 308151837860.5
carbohydrate kinase family proteinPC1_RS13500Not AvailableNegative3081550 - 308249132808.1
abc transporter permeasePC1_RS13505Not AvailableNegative3082537 - 308353535215.5
abc transporter permeasePC1_RS13510Not AvailableNegative3083532 - 308452434673.6
sugar abc transporter atp-binding proteinPC1_RS13515Not AvailableNegative3084521 - 308606856341.3
sugar abc transporter substrate-binding proteinPC1_RS13520Not AvailableNegative3086072 - 308700133354.7
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenasePC1_RS13525Not AvailablePositive3087292 - 308781319642.9
duf1456 family proteinPC1_RS13530Not AvailablePositive3087898 - 308836217815.0
rpn family recombination-promoting nuclease/putative transposasePC1_RS13535Not AvailableNegative3088467 - 308939935689.3
uroporphyrinogen-iii c-methyltransferasePC1_RS13540Not AvailableNegative3089556 - 309038929855.3

Displaying genes 2821 – 2830 of 4369 in total

Metabolites

1955 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 1955 metabolites

Health Effects

No health effects information available for this bacterium.