Pectobacterium carotovorum subsp. carotovorum PC1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum subsp. carotovorum PC1 is a Gram-negative bacterium that exhibits a bacilli shape and possesses flagella, allowing for mobility. This organism is classified as facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments. P. carotovorum PC1 is mesophilic, meaning it grows optimally at moderate temperatures, which typically range from 20°C to 45°C. This bacterium is characterized by having a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. It is nonsporulating, which means it does not form spores as a means of survival, instead relying on its free-living biotic relationship for survival and reproduction. P. carotovorum subsp. carotovorum is primarily associated with host organisms, indicating its role as a plant pathogen. Its ability to move and adapt to varying oxygen levels may contribute to its pathogenicity, facilitating infection in host plants. Understanding the traits of P. carotovorum PC1 can provide insights into its ecological role, particularly in the context of plant health and disease dynamics. As a free-living organism that interacts with host plants, it may influence agricultural practices and the management of plant diseases in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
StrainPC1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pectobacterium carotovorum subsp. carotovorum PC1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum subsp. carotovorum PC1, complete

Gene Summary

Adenine Count

1168310 bp

Thymine Count

1169207 bp

Guanine Count

1258460 bp

Cytosine Count

1266936 bp

Genome Length

4862913 bp

Protein-coding Genes

4113 genes

Non-Coding Genes

256 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
inner membrane protein ybjmPC1_RS08420Not AvailablePositive1948075 - 194844613726.5
grxa family glutaredoxinPC1_RS08425Not AvailableNegative1948513 - 19487799953.85
oxygen-insensitive nadph nitroreductasePC1_RS08430Not AvailablePositive1949087 - 194980626988.6
30s ribosomal protein s6--l-glutamate ligasePC1_RS08435Not AvailablePositive1949823 - 195073432810.8
ybjn domain-containing proteinPC1_RS08440Not AvailablePositive1951002 - 195148117662.3
spermidine/putrescine abc transporter substrate-binding protein potfPC1_RS08445Not AvailablePositive1951854 - 195296340627.5
putrescine abc transporter atp-binding subunit potgPC1_RS08450Not AvailablePositive1953170 - 195430342016.1
putrescine abc transporter permease pothPC1_RS08455Not AvailablePositive1954318 - 195528336314.7
putrescine abc transporter permease potiPC1_RS08460Not AvailablePositive1955280 - 195612530861.9
ybjo family proteinPC1_RS08465Not AvailablePositive1956317 - 195676916602.9

Displaying genes 1851 – 1860 of 4369 in total

Metabolites

1955 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 1955 metabolites

Health Effects

No health effects information available for this bacterium.