Dickeya chrysanthemi Ech1591

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya chrysanthemi strain Ech1591 is a Gram-negative bacterium that exhibits aerobic metabolic capabilities. As a member of the family Pectobacteriaceae, it is characterized by its rod-shaped morphology and its ability to thrive in the presence of oxygen. The Gram-negative nature of D. chrysanthemi Ech1591 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a typical feature that often contributes to the organism's resilience in various environments. This bacterium's aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. While the specific ecological roles or pathogenicity of D. chrysanthemi Ech1591 are not detailed in the available data, its classification within a genus known for causing soft rot in plants suggests that it may have implications in agricultural contexts. Understanding the traits of D. chrysanthemi Ech1591 can provide insights into its potential interactions within microbial communities, particularly in environments where oxygen availability is a key factor. This bacterium's aerobic nature may allow it to outcompete anaerobic microbes in oxygen-rich habitats, highlighting the importance of oxygen as a critical determinant in microbial ecology and dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya chrysanthemi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya chrysanthemi Ech1591

Accession NumberNC_012912.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4132 genes

Non-Coding Genes

175 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1726935 - 1726947Not Available
AttlNot AvailableNot Available+1726935 - 1726947Not Available
Prophage p4 integraseDD1591_RS21445Not Available-1729480 - 17296296096.19
alpa family transcriptional regulatorDD1591_RS07550Not Available-1729785 - 17299787013.56
NerDD1591_RS07555Not Available-1730176 - 173044810193.2
Hypothetical proteinDD1591_RS07560Not Available+1730623 - 173091010693.8
Hypothetical proteinDD1591_RS07565Not Available+1731096 - 173141011533.8
Prophage p4 integraseDD1591_RS07570Not Available-1731524 - 173279548535.5
Trna-asn;Not AvailableNot Available+1732957 - 1733032Not Available
Gp58DD1591_RS07580Not Available+1733417 - 17336809859.06

Displaying genes 1 – 10 of 4307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0017781PE(12:0/18:1(11Z))C35H68NO8PChemical structure of PE(12:0/18:1(11Z))NULL
Average661.902Da
Monoisotopic661.468255152Da
BASm0018523CDP-DG(12:0/14:0)C38H69N3O15P2Chemical structure of CDP-DG(12:0/14:0)NULL
Average869.924Da
Monoisotopic869.42039253Da
BASm0018525CDP-DG(12:0/16:0)C40H73N3O15P2Chemical structure of CDP-DG(12:0/16:0)NULL
Average897.978Da
Monoisotopic897.451692659Da
BASm0018526CDP-DG(12:0/16:1(9Z))C40H71N3O15P2Chemical structure of CDP-DG(12:0/16:1(9Z))NULL
Average895.962Da
Monoisotopic895.436042594Da
BASm0018533CDP-DG(14:0/16:0)C42H77N3O15P2Chemical structure of CDP-DG(14:0/16:0)NULL
Average926.032Da
Monoisotopic925.482992787Da
BASm0018559CDP-DG(16:1(9Z)/18:1(9Z))C46H81N3O15P2Chemical structure of CDP-DG(16:1(9Z)/18:1(9Z))NULL
Average978.108Da
Monoisotopic977.514292916Da
BASm00188761-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0)C17H36NO7PNot availableNULL
Average397.449Da
Monoisotopic397.222939501Da
BASm00188771-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)C19H40NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)NULL
Average425.4972Da
Monoisotopic425.254239151Da
BASm00188791-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)C21H44NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)NULL
Average453.5503Da
Monoisotopic453.285539279Da
BASm00188811-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)C23H48NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)NULL
Average481.6035Da
Monoisotopic481.316839407Da

Displaying 31–40 of 92 metabolites