Musicola paradisiaca Ech703

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Musicola

Description

Musicola paradisiaca Ech703 is a Gram-negative bacterium characterized by its single replicon. The organism is cataloged under the accession number NC_012880.1, which provides a reference for its genetic sequence and associated data. As a Gram-negative bacterium, Musicola paradisiaca Ech703 possesses a cell wall structure that includes a thin peptidoglycan layer surrounded by an outer membrane. This outer membrane is typical of Gram-negative bacteria and often contains lipopolysaccharides, which can play a significant role in the bacterium's interactions with its environment, particularly in terms of immune response and pathogenicity. The presence of a single replicon indicates a streamlined genomic organization, which can be advantageous for replication and regulation of genetic material. This trait is particularly noteworthy as it may influence the bacterium's adaptability and survival strategies in various ecological niches. In summary, Musicola paradisiaca Ech703, as a Gram-negative organism with a single replicon, exemplifies certain structural and genetic characteristics that may impact its ecological roles. Understanding these traits can provide insights into its potential interactions within microbial communities and its responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusMusicola
SpeciesMusicola paradisiaca
StrainEch703

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Musicola paradisiaca Ech703, complete sequence.

Gene Summary

Adenine Count

1050025 bp

Thymine Count

1055022 bp

Guanine Count

1284623 bp

Cytosine Count

1289780 bp

Genome Length

4679450 bp

Protein-coding Genes

3952 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome biogenesis gtpase derDD703_RS13580Not AvailableNegative3194737 - 319622155035.8
outer membrane protein assembly factor bambDD703_RS13585Not AvailableNegative3196349 - 319753042338.1
yfgm family proteinDD703_RS13590Not AvailableNegative3197541 - 319816722397.5
histidine--trna ligaseDD703_RS13595Not AvailableNegative3198181 - 319945547410.7
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseDD703_RS13600Not AvailableNegative3199584 - 320070540889.5
cytoskeleton protein rodzDD703_RS13605Not AvailableNegative3200740 - 320171134710.4
type iv pilus biogenesis/stability protein pilwDD703_RS13610Not AvailableNegative3201701 - 320244727885.1
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnDD703_RS13615Not AvailableNegative3202625 - 320380643691.8
nucleoside-diphosphate kinaseDD703_RS13620Not AvailableNegative3203966 - 320439715575.4
3-mercaptopyruvate sulfurtransferaseDD703_RS13625Not AvailablePositive3204829 - 320568330707.6

Displaying genes 2801 – 2810 of 4110 in total

Metabolites

1815 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da

Displaying 1–10 of 1815 metabolites

Health Effects

No health effects information available for this bacterium.