Musicola paradisiaca Ech703

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Musicola

Description

Musicola paradisiaca Ech703 is a Gram-negative bacterium characterized by its single replicon. The organism is cataloged under the accession number NC_012880.1, which provides a reference for its genetic sequence and associated data. As a Gram-negative bacterium, Musicola paradisiaca Ech703 possesses a cell wall structure that includes a thin peptidoglycan layer surrounded by an outer membrane. This outer membrane is typical of Gram-negative bacteria and often contains lipopolysaccharides, which can play a significant role in the bacterium's interactions with its environment, particularly in terms of immune response and pathogenicity. The presence of a single replicon indicates a streamlined genomic organization, which can be advantageous for replication and regulation of genetic material. This trait is particularly noteworthy as it may influence the bacterium's adaptability and survival strategies in various ecological niches. In summary, Musicola paradisiaca Ech703, as a Gram-negative organism with a single replicon, exemplifies certain structural and genetic characteristics that may impact its ecological roles. Understanding these traits can provide insights into its potential interactions within microbial communities and its responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusMusicola
SpeciesMusicola paradisiaca
StrainEch703

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Musicola paradisiaca Ech703, complete sequence.

Gene Summary

Adenine Count

1050025 bp

Thymine Count

1055022 bp

Guanine Count

1284623 bp

Cytosine Count

1289780 bp

Genome Length

4679450 bp

Protein-coding Genes

3952 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radc family proteinDD703_RS11700Not AvailableNegative2762465 - 276297418742.4
yhcg family proteinDD703_RS11705Not AvailableNegative2763309 - 276447543905.6
integrase core domain-containing proteinDD703_RS11710Not AvailableNegative2764472 - 276567144797.3
yejg family proteinDD703_RS11715Not AvailableNegative2765882 - 276623513278.9
bcr/cfla family multidrug efflux mfs transporterDD703_RS11720Not AvailableNegative2766548 - 276774443224.4
16s rrna pseudouridine(516) synthase rsuaDD703_RS11725Not AvailableNegative2767811 - 276850925899.9
yech family metal-binding proteinDD703_RS11730Not AvailablePositive2768683 - 27689228680.36
dead/deah box helicaseDD703_RS11735Not AvailablePositive2768922 - 277068266494.4
50s ribosomal protein l25DD703_RS11740Not AvailablePositive2770845 - 277113210651.9
ofa family mfs transporterDD703_RS11745Not AvailableNegative2771290 - 277250743312.8

Displaying genes 2421 – 2430 of 4110 in total

Metabolites

1815 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da

Displaying 1–10 of 1815 metabolites

Health Effects

No health effects information available for this bacterium.