Solidesulfovibrio magneticus RS-1

rod

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Solidesulfovibrio

Description

Solidesulfovibrio magneticus RS-1 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses three replicons, which are essential for its genetic stability and replication processes. The strain is cataloged under several accession numbers, including NC_012795.1, NC_012796.1, and NC_012797.1, which provide access to its genomic data and facilitate further studies on its genetics and biology. The unique combination of being a Gram-negative rod and having multiple replicons suggests a complex regulatory and metabolic capacity, which could be advantageous in various ecological niches. This bacterium is known for its magnetic properties, which may play a role in its ecological interactions and behavior within its environment. The presence of magnetosomes in such bacteria is often linked to navigation and positioning in aquatic environments, allowing them to orient themselves relative to the Earth's magnetic field. Understanding the traits of Solidesulfovibrio magneticus RS-1 contributes to the broader knowledge of microbial diversity and the ecological roles that such microorganisms play. Their adaptations, particularly to magnetic fields, may influence biogeochemical cycles and the dynamics of microbial communities in their habitats. Thus, further exploration of this organism's biological functions and ecological interactions could provide insights into its role in the environment and potential applications in biotechnology or environmental science.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusSolidesulfovibrio
SpeciesSolidesulfovibrio magneticus
StrainRS-1

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Solidesulfovibrio magneticus RS-1, complete sequence.

Gene Summary

Adenine Count

976678 bp

Thymine Count

977201 bp

Guanine Count

1646869 bp

Cytosine Count

1647301 bp

Genome Length

5248049 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gnat family n-acetyltransferaseDMR_RS14835Not AvailableNegative3513943 - 351450920180.7
tetratricopeptide repeat proteinDMR_RS14840Not AvailableNegative3514514 - 351683583716.3
diguanylate cyclaseDMR_RS14845Not AvailableNegative3517176 - 351855250678.9
nad+ synthaseDMR_RS14850Not AvailablePositive3518887 - 352063862638.0
hypothetical proteinDMR_RS14855Not AvailablePositive3520950 - 352176529781.9
dksa/trar family c4-type zinc finger proteinDMR_RS14860Not AvailableNegative3521902 - 35221689467.03
response regulatorDMR_RS14865Not AvailableNegative3522245 - 352413467337.0
ggdef domain-containing proteinDMR_RS14870Not AvailablePositive3524538 - 352540131989.9
dna-directed rna polymerase subunit beta'DMR_RS14875Not AvailableNegative3525535 - 3529701154443.0
dna-directed rna polymerase subunit betaDMR_RS14880Not AvailableNegative3529895 - 3534004152844.0

Displaying genes 3121 – 3130 of 4714 in total

Metabolites

1611 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 1611 metabolites

Health Effects

No health effects information available for this bacterium.