Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Candidatus Williamhamiltonella

Description

Candidatus Hamiltonella defensa 5AT is a Gram-negative, rod-shaped bacterium associated with the host Acyrthosiphon pisum, commonly known as the pea aphid. This bacterium is characterized by its mesophilic temperature range, which implies it thrives in moderate temperature conditions typical of its aphid host's environment. Having a single replicon, Candidatus Hamiltonella defensa 5AT demonstrates a streamlined genomic structure, which may contribute to its specialized symbiotic relationship with the pea aphid. The bacterium is known to play a significant role in enhancing the aphid's resistance to parasitism, particularly from wasps that prey on aphids. This interaction exemplifies the complexity of biotic relationships in nature, where mutualistic partnerships can lead to enhanced survival and reproductive success for the host. The accession number NC_012752.1 is associated with the genomic data of Candidatus Hamiltonella defensa 5AT, providing a resource for further studies into its genetic makeup and symbiotic mechanisms. Understanding this bacterium's role in the ecology of Acyrthosiphon pisum not only sheds light on the intricate relationships between microorganisms and their hosts but also highlights the importance of symbiotic bacteria in agricultural pest management. By enhancing the resilience of the pea aphid against natural enemies, Candidatus Hamiltonella defensa 5AT may indirectly influence plant health and crop yield in ecosystems where these aphids are present.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCandidatus Williamhamiltonella
SpeciesCandidatus Williamhamiltonella defendens
Strain5AT (Acyrthosiphon pisum)

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)


Gene Summary

Adenine Count

15501 bp

Thymine Count

16768 bp

Guanine Count

13587 bp

Cytosine Count

13123 bp

Genome Length

59032 bp

Protein-coding Genes

65 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid replication initiator repaHDEF_RS10520Not AvailablePositive1 - 84032135.3
hypothetical proteinHDEF_RS12680Not AvailablePositive1511 - 16545267.54
helix-turn-helix transcriptional regulatorHDEF_RS10530Not AvailablePositive1856 - 213110580.1
pas domain-containing proteinHDEF_RS10535Not AvailablePositive2320 - 298225181.2
dna mismatch repair endonuclease mutlHDEF_RS10540Not AvailableNegative3239 - 501166500.9
hypothetical proteinHDEF_RS12685Not AvailablePositive5056 - 51934871.01
jmjc domain-containing proteinHDEF_RS10545Not AvailableNegative5253 - 635642275.3
recombinase family proteinHDEF_RS10550Not AvailablePositive6732 - 729221300.7
antitoxinHDEF_RS10555Not AvailablePositive7657 - 78939170.98
type ii toxin-antitoxin system vapc family toxinHDEF_RS10560Not AvailablePositive7890 - 828514987.3

Displaying genes 1 – 10 of 65 in total

Metabolites

1656 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 1656 metabolites

Health Effects

No health effects information available for this bacterium.