Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Candidatus Williamhamiltonella

Description

Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum). Candidatus Hamiltonella defensa 5AT was isolated from the pea aphid Acyrthosiphon pisum and will be used for comparative analysis with other insect symbionts. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCandidatus Williamhamiltonella
SpeciesCandidatus Williamhamiltonella defendens
Strain5AT (Acyrthosiphon pisum)

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Acyrthosiphon pisum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

NC_012752.1

Gene Summary

Adenine Count

15501 bp

Thymine Count

16768 bp

Guanine Count

13587 bp

Cytosine Count

13123 bp

Genome Length

59032 bp

Protein-coding Genes

65 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
plasmid replication initiator repaHDEF_RS10520Not Available+1 - 84032135.3
hypothetical proteinHDEF_RS12680Not Available+1511 - 16545267.54
helix-turn-helix transcriptional regulatorHDEF_RS10530Not Available+1856 - 213110580.1
pas domain-containing proteinHDEF_RS10535Not Available+2320 - 298225181.2
dna mismatch repair endonuclease mutlHDEF_RS10540Not Available-3239 - 501166500.9
hypothetical proteinHDEF_RS12685Not Available+5056 - 51934871.01
jmjc domain-containing proteinHDEF_RS10545Not Available-5253 - 635642275.3
recombinase family proteinHDEF_RS10550Not Available+6732 - 729221300.7
antitoxinHDEF_RS10555Not Available+7657 - 78939170.98
type ii toxin-antitoxin system vapc family toxinHDEF_RS10560Not Available+7890 - 828514987.3

Displaying genes 1 – 10 of 65 in total

Metabolites

1615 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002626(6Z,9Z,12Z)-octadecatrienoyl-CoAC39H60N7O17P3SChemical structure of (6Z,9Z,12Z)-octadecatrienoyl-CoANot available
Average1023.92Da
Monoisotopic1023.300119988Da
BASm0002644(9Z,12Z)-octadecadienoyl-CoAC39H62N7O17P3SChemical structure of (9Z,12Z)-octadecadienoyl-CoA6709-57-5
Average1025.94Da
Monoisotopic1025.31577Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 1615 metabolites