Laribacter hongkongensis HLHK9

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Neisseriales

Family

Aquaspirillaceae

Genus

Laribacter

Description

Laribacter hongkongensis is a facultatively anaerobic, gram-negative bacterium first isolated from the blood and empyema pus of a 36 year-old patient suffering from alcoholic cirrhosis in Hong Kong. Subsequently, it has been found in patients with gastroenteritis, freshwater fish and drinking water reservoirs. It cannot survive in marine fish. A multi-center study has demonstrated its association with community-acquired gastroenteritis/diarrhea. It is motile, seagull or S-shaped, asaccharolytic, and urease-positive. Genome and proteome analysis of L. hongkongensis revealed novel mechanisms for adaptations to survival at different temperatures and habitats (adapted from PubMed 19283063). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Neisseriales
Family	Aquaspirillaceae
Genus	Laribacter
Species	Laribacter hongkongensis
Strain	HLHK9

Profile

Physiology
Gram staining properties	Negative
Shape	Bacilli
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	HostAssociated
Biotic relationship	Free living
Host(s)	Homo sapiens
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Laribacter hongkongensis HLHK9

Gene Summary

Adenine Count

596540 bp

Thymine Count

596639 bp

Guanine Count

988227 bp

Cytosine Count

987923 bp

Genome Length

3169329 bp

Protein-coding Genes

2891 genes

Non-Coding Genes

276 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
Attl	Not Available	Not Available	+	359523 - 359536	Not Available
phage integrase n-terminal sam-like domain-containing protein	LHK_RS17095	Not Available	+	365683 - 365844	6219.46
Tail protein d	LHK_RS01860	Not Available	-	365841 - 367034	43107.8
Tail protein	LHK_RS01865	Not Available	-	367016 - 367483	17233.9
Tail tape measure protein	LHK_RS01870	Not Available	-	367488 - 370100	92189.9
Gp14	LHK_RS15640	Not Available	-	370101 - 370214	4321.11
Tail assembly protein	LHK_RS01880	Not Available	-	370223 - 370516	10473.8
Major tail tube protein	LHK_RS01885	Not Available	-	370531 - 371040	18715.5
Tail sheath protein	LHK_RS01890	Not Available	-	371050 - 372225	42587.4
hypothetical protein	LHK_RS01895	Not Available	-	372280 - 372588	11325.5

Displaying genes 1 – 10 of 3167 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000217	alpha-ribazoleC14H18N2O4		Not available	Average278.3037Da Monoisotopic278.126657074Da
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000254	3-hydroxy-2-methylpropanoateC4H7O3		Not available	Average103.098Da Monoisotopic103.0400677Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000288	aminohydroquinoneC6H7NO2		Not available	Average125.127Da Monoisotopic125.0476785Da
BASm0000305	tetrathionateO6S4		Not available	Average224.24Da Monoisotopic223.8588696Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da

Displaying 1–10 of 1989 metabolites