Chloroflexus aggregans DSM 9485

Gram-negativeFilamentousMotileFacultative

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Chloroflexia

Order

Chloroflexales

Family

Chloroflexaceae

Genus

Chloroflexus

Description

The phylum Chloroflexi is an early branching anoxygenic phototroph lineage within the Bacteria. Often grouped as the green non-sulfur bacterial (GNSB) branch of the 16S rRNA tree of life, this name is misleading, as not all members are green and some use sulfide. Its members are apparently metabolically diverse and widely distributed in nature. Although these organisms generally stain Gram-negative, a lipopolysaccharide-containing outer membrane is not present and the peptidoglycan is a variant that usually contains L-ornithine as the diamino acid. Most members of the Chloroflexi exhibit gliding motility. Members of the Family Chloroflexaceae are gliding filamentous, anoxygenic phototrophs. The "green" members of this family (Chloroflexus spp., Chloronema spp., Oscillochloris spp., and Chlorothrix spp.) synthesize bacteriochlorophylls a and c and use chlorosomes as their light harvesting antennae, while the "red" members of this family (Heliothrix and Roseiflexus spp.) only synthesize bacteriochlorophyll a and thus lack chlorosomes. The phylum Chloroflexi is heterogeneous with regard to metabolic properties, exhibiting two different pathways for carbon fixation (reductive pentose phosphate (Calvin cycle) and 3-hydroxy-propionate pathways), and their photosynthetic apparatus is a hybrid between that of green sulfur bacteria and purple bacteria.Chloroflexus aggregans MD-66, the type strain for this species, was originally isolated from Okukinu Meotobuchi hot spring in Tochigi Prefecture, Japan in 1995, where it grew as yellow streamers on a cyanobacterial mat. This hot spring contains 18 mM sodium chloride and 3 mM sodium bicarbonate as its major salts and trace amounts of sulfide. MD-66 grows anaerobically as a photoheterotroph and aerobically as a chemoheterotroph. The optimal growth temperature for C. aggregans is 55 degrees Celsius. It forms unbranched multicellular filaments of indefinite length, where the filaments are clearly septate. The cells have no flagella but are motile by gliding. Cultures grow by forming mat-like aggregates in liquid that have the appearance of green balls. Cell aggregates reform rapidly whenever a culture is shaken to produce a uniform suspension under growth conditions. Photosynthetic cultures are green to greenish brown. Bacteriochlorophylls a and c are present in phototrophically grown cells (under anaerobic conditions) and to a certain extent in chemotrophically grown cells under aerobic conditions. Chlorosomes are present, and the major quinone is menaquinone 10 (adapted from PubMed 7547286 and http://genome.jgi-psf.org/finished_microbes/chlgg/chlgg.home.html). (HAMAP: CHLAD)

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassChloroflexia
OrderChloroflexales
FamilyChloroflexaceae
GenusChloroflexus
SpeciesChloroflexus aggregans
StrainDSM 9485

Profile

Physiology
Gram staining propertiesNegative
ShapeFilamentous
MobilityYes
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourcePhotosynthetic
PathogenicityNo

Genome Summary

Chloroflexus aggregans DSM 9485


Gene Summary

Adenine Count

1020094 bp

Thymine Count

1021201 bp

Guanine Count

1321775 bp

Cytosine Count

1321861 bp

Genome Length

4684931 bp

Protein-coding Genes

3837 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaCAGG_RS00005B8GBK7+208 - 164453504.4
s41 family peptidaseCAGG_RS00010F4KHG6-1767 - 316450002.1
plp-dependent aminotransferase family proteinCAGG_RS00015H3ZPL1+3284 - 442041137.3
rlua family pseudouridine synthaseCAGG_RS00020Q9KQH0+4428 - 535133150.3
duf2325 domain-containing proteinCAGG_RS00025Not Available+5441 - 697657561.6
tigr04086 family membrane proteinCAGG_RS00030Not Available-6981 - 736413105.6
hypothetical proteinCAGG_RS00035Not Available-7397 - 765410120.5
hypothetical proteinCAGG_RS00040Not Available-7957 - 827411456.2
abc transporter atp-binding proteinCAGG_RS00045Not Available-8352 - 907726639.3
valine--trna ligaseCAGG_RS00050Q3Z9C5+9278 - 12046104547.0

Displaying genes 1 – 10 of 3896 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

429 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 429 metabolites