Desulfitobacterium hafniense DCB-2

Gram-negativeBacilliMotileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfitobacteriaceae

Genus

Desulfitobacterium

Description

Desulfitobacterium hafniense DCB-2 is a Gram-negative, anaerobic bacillus that thrives in specialized habitats. This bacterium typically exists in chains, pairs, or as single cells, showcasing a unique cell arrangement. D. hafniense DCB-2 is motile due to the presence of flagella, which facilitate its movement in its anaerobic environment. The optimal growth temperature for D. hafniense DCB-2 is 37°C, placing it within the mesophilic temperature range. This organism has a single replicon and features one membrane, characteristic of its cellular structure. D. hafniense DCB-2 is capable of sporulation, which may serve as a survival mechanism in fluctuating conditions. As a free-living bacterium, D. hafniense DCB-2 does not exhibit pathogenicity, making it a non-harmful member of its ecosystem. Its ability to thrive in anaerobic environments and its sporulating nature may contribute to its ecological role, particularly in biogeochemical cycles. The strain is cataloged under accession number NC_011830.1, which provides a reference for further genetic and functional studies. Understanding the traits of D. hafniense DCB-2 can provide insights into its ecological functions, particularly in anaerobic degradation processes, which are vital for nutrient cycling in specialized habitats.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusDesulfitobacterium
SpeciesDesulfitobacterium hafniense
StrainDCB-2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Desulfitobacterium hafniense DCB-2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains- Pairs- Singles
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfitobacterium hafniense DCB-2, complete sequence.

Gene Summary

Adenine Count

1388107 bp

Thymine Count

1381467 bp

Guanine Count

1261094 bp

Cytosine Count

1248466 bp

Genome Length

5279134 bp

Protein-coding Genes

4850 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate--coa ligase subunit alphaDHAF_RS01035Not AvailablePositive214720 - 21559830823.9
slc13 family permeaseDHAF_RS01040Not AvailablePositive215751 - 21724753338.2
gntr family transcriptional regulatorDHAF_RS01045Not AvailablePositive217448 - 21816427448.2
b12-binding domain-containing proteinDHAF_RS01050Not AvailablePositive218331 - 21898723756.1
uroporphyrinogen decarboxylase family proteinDHAF_RS01055Not AvailablePositive218984 - 21999136759.5
gaf domain-containing sensor histidine kinaseDHAF_RS01060Not AvailablePositive219984 - 22129449211.7
sigma-54-dependent transcriptional regulatorDHAF_RS01065Not AvailablePositive221287 - 22267251945.8
hypothetical proteinDHAF_RS01070Not AvailableNegative222673 - 22322419882.8
abc transporter permeaseDHAF_RS01075Not AvailablePositive223613 - 22481542903.8
abc transporter atp-binding proteinDHAF_RS01080Not AvailablePositive224824 - 22553726395.0

Displaying genes 321 – 330 of 5018 in total

Metabolites

1528 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1528 metabolites

Health Effects

No health effects information available for this bacterium.