Escherichia coli 55989

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 55989 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration. It possesses flagella, enabling mobility, and typically exists in pairs or as single cells. This strain is mesophilic, with an optimal growth temperature of 37°C, making it well-suited for life within the human host, where it is often found. E. coli 55989 is notable for its pathogenicity, indicating its potential to cause disease. It is a nonsporulating organism, which means it does not form spores as a means of survival under unfavorable conditions. Instead, it thrives in host-associated environments, reflecting its free-living biotic relationship, where it may contribute to both beneficial and harmful interactions with its host. With a single replicon and a double membrane structure, E. coli 55989 embodies characteristics common to many Enterobacteriaceae members. The presence of two membranes signifies its classification as a Gram-negative bacterium, which is important in understanding its antibiotic resistance mechanisms and interactions with the immune system. The dual nature of E. coli 55989—both as a commensal and a potential pathogen—highlights its ecological significance. It serves as a model organism for studying microbial physiology and pathogenicity, while also illustrating the complex dynamics of host-microbe interactions in human health. Understanding such strains can aid in developing strategies to mitigate infections caused by pathogenic E. coli variants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain55989

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 55989
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Escherichia coli 55989


Gene Summary

Adenine Count

1273428 bp

Thymine Count

1270172 bp

Guanine Count

1303042 bp

Cytosine Count

1308220 bp

Genome Length

5154862 bp

Protein-coding Genes

4634 genes

Non-Coding Genes

433 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine/thiamine pyrophosphate abc transporter permease thipEC55989_RS00335P31549Negative73331 - 7494159292.5
thiamine abc transporter substrate binding subunitEC55989_RS00340P31550Negative74917 - 7590036164.2
dna-binding transcriptional regulator sgrrEC55989_RS00345Q3Z5U2Negative76064 - 7771964007.7
glucose uptake inhibitor sgrtEC55989_RS00350C1P5Z7Positive77808 - 779395338.42
sugar efflux transporter setaEC55989_RS00355P31675Positive78041 - 7921942738.9
3-isopropylmalate dehydratase small subunitEC55989_RS00360A7ZHG3Negative79268 - 7987322488.7
3-isopropylmalate dehydratase large subunitEC55989_RS00365B7L4J3Negative79884 - 8128449914.8
3-isopropylmalate dehydrogenaseEC55989_RS00370P30125Negative81287 - 8237839519.3
2-isopropylmalate synthaseEC55989_RS00375A7ZHG6Negative82378 - 8394957287.1
leu operon leader peptideEC55989_RS00380P0AD81Negative84042 - 841283146.0

Displaying genes 431 – 440 of 5067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4845 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4845 metabolites

Health Effects

No health effects information available for this bacterium.