Escherichia coli 55989

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 55989 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration. It possesses flagella, enabling mobility, and typically exists in pairs or as single cells. This strain is mesophilic, with an optimal growth temperature of 37°C, making it well-suited for life within the human host, where it is often found. E. coli 55989 is notable for its pathogenicity, indicating its potential to cause disease. It is a nonsporulating organism, which means it does not form spores as a means of survival under unfavorable conditions. Instead, it thrives in host-associated environments, reflecting its free-living biotic relationship, where it may contribute to both beneficial and harmful interactions with its host. With a single replicon and a double membrane structure, E. coli 55989 embodies characteristics common to many Enterobacteriaceae members. The presence of two membranes signifies its classification as a Gram-negative bacterium, which is important in understanding its antibiotic resistance mechanisms and interactions with the immune system. The dual nature of E. coli 55989—both as a commensal and a potential pathogen—highlights its ecological significance. It serves as a model organism for studying microbial physiology and pathogenicity, while also illustrating the complex dynamics of host-microbe interactions in human health. Understanding such strains can aid in developing strategies to mitigate infections caused by pathogenic E. coli variants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain55989

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 55989
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Escherichia coli 55989, complete sequence.

Gene Summary

Adenine Count

1273428 bp

Thymine Count

1270172 bp

Guanine Count

1303042 bp

Cytosine Count

1308220 bp

Genome Length

5154862 bp

Protein-coding Genes

4634 genes

Non-Coding Genes

433 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
small membrane protein yoaiEC55989_RS10100Q8XDT5Negative2022511 - 20226153771.77
duf441 domain-containing proteinEC55989_RS10105B7L6R4Positive2022785 - 202323115228.6
dna-binding transcriptional regulator nimrEC55989_RS10110P76241Negative2023188 - 202400930472.2
2-nitroimidazole transporterEC55989_RS10115P76242Positive2024106 - 202528741264.9
duf488 domain-containing proteinEC55989_RS10120P76243Positive2025342 - 202568913340.9
duf333 domain-containing lipoprotein yoafEC55989_RS10125P64494Negative2025711 - 20259658904.77
diguanylate cyclase dgcpEC55989_RS10130P76245Positive2026148 - 202717338507.7
yoak family small membrane proteinEC55989_RS10135C1P602Positive2027206 - 20273043458.45
protein yoajEC55989_RS28040Not AvailablePositive2027307 - 20273812691.57
glsb/yeaq/ymge family stress response membrane proteinEC55989_RS10140P64487Negative2027440 - 20276888671.14

Displaying genes 2111 – 2120 of 5067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4845 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4845 metabolites

Health Effects

No health effects information available for this bacterium.