Pelodictyon phaeoclathratiforme BU-1

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Chlorobiota

Class

Chlorobiia

Order

Chlorobiales

Family

Chlorobiaceae

Genus

Pelodictyon

Description

Pelodictyon phaeoclathratiforme BU-1 is a Gram-negative, anaerobic bacterium characterized by its bacilli shape and non-motile nature. This organism is free-living, thriving in multiple habitats where it utilizes photosynthesis as its energy source, classifying it as a phototroph. The bacterium has a unique cellular structure, featuring two membranes and a single replicon. Its optimal growth temperature is 15°C, placing it in the mesophilic temperature range. Notably, Pelodictyon phaeoclathratiforme BU-1 does not form spores, which is a relevant trait for its survival and reproduction in its specific ecological niches. The presence of flagella indicates a potential evolutionary adaptation, although the organism is not motile, suggesting that the flagella may serve a different function, perhaps related to sensory mechanisms or attachment. The unique combination of traits, such as its anaerobic lifestyle and photosynthetic capabilities, enables Pelodictyon phaeoclathratiforme BU-1 to occupy ecological niches where light is available but free oxygen is limited. Understanding the characteristics of Pelodictyon phaeoclathratiforme BU-1 provides insights into its ecological role in the environment, particularly in anaerobic ecosystems where it contributes to carbon cycling through its photosynthetic processes. This bacterium exemplifies the diversity of microbial life and its adaptations to specific environmental conditions. Its accession number is NC_011060.1, which can facilitate further research into its genetic makeup and functional capacities.

Taxonomy

KingdomPseudomonadati
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusPelodictyon
SpeciesPelodictyon phaeoclathratiforme
StrainBU-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pelodictyon phaeoclathratiforme BU-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature15
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourcePhototroph- Photosynthetic
PathogenicityNot Available

Genome Summary

Pelodictyon phaeoclathratiforme BU-1, complete sequence.

Gene Summary

Adenine Count

788810 bp

Thymine Count

778332 bp

Guanine Count

720469 bp

Cytosine Count

730627 bp

Genome Length

3018238 bp

Protein-coding Genes

2861 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)/fad-dependent oxidoreductasePPHA_RS00055Not AvailablePositive11686 - 1297845842.3
protein translocase subunit secdPPHA_RS00060Not AvailablePositive13137 - 1501168133.7
protein translocase subunit secfPPHA_RS00065Not AvailablePositive15033 - 1596834239.0
peptidylprolyl isomerasePPHA_RS00070Not AvailablePositive16068 - 1738448333.8
dna topoisomerase (atp-hydrolyzing) subunit bPPHA_RS00075Not AvailableNegative17373 - 1932272945.2
yran family proteinPPHA_RS00080Not AvailableNegative19407 - 1979314755.8
ribonuclease hiiPPHA_RS00085Not AvailableNegative19790 - 2041022927.7
duf2461 domain-containing proteinPPHA_RS00090Not AvailableNegative20484 - 2115825188.1
type ii toxin-antitoxin system hicb family antitoxinPPHA_RS00095Not AvailableNegative21238 - 2155511914.0
type ii toxin-antitoxin system hica family toxinPPHA_RS00100Not AvailableNegative21542 - 2181410404.6

Displaying genes 11 – 20 of 2922 in total

Metabolites

1695 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1695 metabolites

Health Effects

No health effects information available for this bacterium.