Chlorobium limicola DSM 245

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Chlorobiota

Class

Chlorobiia

Order

Chlorobiales

Family

Chlorobiaceae

Genus

Chlorobium

Description

Chlorobium limicola DSM 245 is a gram-negative, rod-shaped bacterium that thrives in aquatic environments. This organism is classified as a photoautotroph, utilizing photosynthesis as its primary energy source, and it does so under anaerobic conditions, meaning it does not require oxygen for growth. C. limicola exhibits a non-motile lifestyle, characterized by a cell arrangement that can be found in singles or chains. Belonging to the group of free-living microorganisms, C. limicola is non-pathogenic, indicating that it does not cause disease in other organisms. It is also nonsporulating, which means it does not produce spores to survive adverse conditions. The bacterium possesses a single replicon and is enveloped by two membranes, a typical feature of gram-negative bacteria. C. limicola is classified as mesophilic, indicating an optimal growth temperature range conducive to life in moderate temperature environments. The presence of flagella suggests potential for motility in related taxa, although C. limicola itself is non-motile. The ecological role of Chlorobium limicola is significant in aquatic ecosystems, where it contributes to the cycling of nutrients through photosynthetic processes. Its ability to thrive in anaerobic conditions allows it to occupy niches that may be inhospitable to other organisms, thus promoting biodiversity and supporting the stability of aquatic ecosystems. The organism's adaptability highlights the intricate relationships within microbial communities and their importance in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusChlorobium
SpeciesChlorobium limicola
StrainDSM 245

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Chlorobium limicola DSM 245
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNonsporulating
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNo

Genome Summary

Chlorobium limicola DSM 245


Gene Summary

Adenine Count

671353 bp

Thymine Count

673851 bp

Guanine Count

703878 bp

Cytosine Count

714099 bp

Genome Length

2763181 bp

Protein-coding Genes

2486 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna-binding domain-containing proteinCLIM_RS03945Not AvailablePositive859087 - 86032546224.6
is1182 family transposaseCLIM_RS03950Not AvailableNegative860463 - 86183051177.5
wadjet anti-phage system protein jetd domain-containing proteinCLIM_RS03955Not AvailablePositive862235 - 86251310408.7
pmeii family type ii restriction endonucleaseCLIM_RS03960Not AvailableNegative862667 - 86340127571.7
dna-methyltransferaseCLIM_RS03965Not AvailableNegative863361 - 86424234395.3
peptide chain release factor 3CLIM_RS03970Not AvailableNegative864572 - 86616460527.4
alanine/glycine:cation symporter family proteinCLIM_RS03975Not AvailablePositive866440 - 86777146923.8
inorganic diphosphataseCLIM_RS03980Not AvailablePositive867867 - 86840020192.1
adp-polyphosphate phosphotransferaseCLIM_RS03985Not AvailablePositive868609 - 86949334830.7
class ii fumarate hydrataseCLIM_RS03990Not AvailablePositive869530 - 87096050573.3

Displaying genes 791 – 800 of 2543 in total

Metabolites

1707 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1707 metabolites

Health Effects

No health effects information available for this bacterium.