Sulfurihydrogenibium sp. YO3AOP1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Hydrogenothermaceae

Genus

Sulfurihydrogenibium

Description

Sulfurihydrogenibium sp. (strain YO3AOP1) is a thermophilic bacterium that gets energy through the oxidation of hydrogen or reduced sulfur compounds. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyHydrogenothermaceae
GenusSulfurihydrogenibium
SpeciesSulfurihydrogenibium sp. YO3AOP1
StrainYO3AOP1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Sulfurihydrogenibium sp. YO3AOP1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph- Chemolithoautotroph
PathogenicityNo

Genome Summary

Sulfurihydrogenibium sp. YO3AOP1

NC_010730.1

Gene Summary

Adenine Count

622631 bp

Thymine Count

627005 bp

Guanine Count

291279 bp

Cytosine Count

297527 bp

Genome Length

1838442 bp

Protein-coding Genes

1824 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSYO3AOP1_RS00010Not Available+129 - 150852739.8
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbSYO3AOP1_RS00015Not Available+2017 - 276927508.8
3-phosphoshikimate 1-carboxyvinyltransferaseSYO3AOP1_RS00020Not Available+2753 - 404847244.3
thiamine phosphate synthaseSYO3AOP1_RS00025Not Available-4593 - 521323100.0
s1c family serine proteaseSYO3AOP1_RS00030Not Available+5366 - 641538668.1
hypothetical proteinSYO3AOP1_RS00035Not Available-6942 - 737617582.3
nucleotidyltransferase domain-containing proteinSYO3AOP1_RS00040Not Available-7369 - 766211309.7
metallopeptidase tldd-related proteinSYO3AOP1_RS00045Not Available-7659 - 904750500.6
hypothetical proteinSYO3AOP1_RS00050Not Available-9060 - 953918244.0
eal domain-containing proteinSYO3AOP1_RS00055Not Available+9746 - 12604110950.0

Displaying genes 1 – 10 of 1875 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

65 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0001971heptanedioateC7H10O4Chemical structure of heptanedioateNot available
Average158.154Da
Monoisotopic158.059006Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da

Displaying 1–10 of 65 metabolites