Porphyromonas gingivalis ATCC 33277

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas gingivalis is a Gram-negative anaerobe. It is a secondary colonizer of the oral cavity and has a role in the initiation and progression of periodontal disease, which is the major cause of tooth loss in industrial nations. It is a chronic inflammatory disease of the periodontium that leads to erosion of the attachment apparatus and supporting bone for teeth and is one of the most frequently occurring infectious diseases in humans. Recently, a number of epidemiological studies have shown significant relationships between periodontal diseases and cardiovascular diseases. P.gingivalis, which is often found in deep periodontal pockets of humans, is asaccharolytic and highly proteolytic and produces a broad array of potential virulence factors involved in tissue colonization and destruction as well as host defense perturbation. P. gingivalis strains are divided into virulent and less-virulent strans; ATCC 33277, the type strain, is a less-virulent strain unlike W83, the only other currently sequenced member of the species (PORGI). It produces only a localized abscess 3 days after subcutaneous inoculation (adapted from PubMed 18524787). (HAMAP: PORG3)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas gingivalis
StrainATCC 33277

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Porphyromonas gingivalis ATCC 33277
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Porphyromonas gingivalis ATCC 33277


Gene Summary

Adenine Count

609298 bp

Thymine Count

606782 bp

Guanine Count

567867 bp

Cytosine Count

570939 bp

Genome Length

2354886 bp

Protein-coding Genes

2030 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaPGN_RS00005Not Available+1 - 142253365.4
acyltransferasePGN_RS00010Not Available+1435 - 200720576.8
acyltransferasePGN_RS00015Not Available-2009 - 302838422.0
nad-dependent deacylasePGN_RS00020Not Available+3108 - 381226124.3
metallophosphoesterasePGN_RS00025Not Available-3887 - 504143790.8
mate family efflux transporterPGN_RS00030Not Available-5094 - 647350242.8
Trna-asnNot AvailableNot Available+6601 - 6677Not Available
Trna-asnNot AvailableNot Available+6700 - 6773Not Available
duf1661 domain-containing proteinPGN_RS12200Not Available-6933 - 70133100.8
duf1661 domain-containing proteinPGN_RS10930Not Available+6994 - 738014447.4

Displaying genes 1 – 10 of 2097 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

354 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 354 metabolites